Bioinformatics and Deliverables
Our bioinformatics services include below analysis, deliverables and data management.
Analysis
QC and bioinformatics analysis is done in Illuminas Genome Studio software.
Deliverables
- Excel file summarizing information about the experimental setup and methods (MIAME.xls)
- 5 folder:DecodeData – files used during scanning.
- GenomeStudio – executable file (.bsc) for the created GenomStudio project.
- ImageData – scanned image files and data extracted from corresponding image file.
- LTW – lab Tracking Works sheet (.xlsx)
- SamplesSheet – sample information used to create genome Studio project (csv-file).
Data management and analysis
- CTG uses LUNARC, center for scientific and technical computing at Lund University facility, for data management and analysis.
Delivery medium
- Your project data will be delivered through external hard drive provided by CTG.
Data storage
- The project data will be stored for 6 months.
Additional Services
- For additional Bioinformatics services please contact NBIS – National Bioinformatics Infrastructure Sweden, (https://nbis.se/).
Contact for service
E-mail:CTGservice [at] med [dot] lu [dot] se (CTGservice[at]med[dot]lu[dot]se)
Ingrid Wilson
Phone: +46 - (0) 46-222 04 44